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Open Problems in Single-Cell Analysis

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https://openproblems.bio

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openproblems Public

Formalizing and benchmarking open problems in single-cell genomics

Shell 331 82
website Public

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TeX 4 8

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Showing 10 of 35 repositories

task_grn_inference Public

Python 8 MIT 2 1 (1 issue needs help) 0 Updated Mar 27, 2025
task_ist_preprocessing Public

Python 5 MIT 3 4 6 Updated Mar 23, 2025
task_batch_integration Public

Python 6 MIT 5 6 3 Updated Mar 21, 2025
website Public
Legacy website

TeX 4 CC-BY-4.0 8 33 (1 issue needs help) 13 Updated Mar 20, 2025
task_denoising Public
Removing noise in sparse single-cell RNA-sequencing count data

Python 1 MIT 2 2 0 Updated Mar 19, 2025
task_cyto_batch_integration Public

Python 1 MIT 1 7 0 Updated Mar 19, 2025
task_spatial_simulators Public
Benchmarking spatial simulators

R 0 MIT 1 0 1 Updated Mar 18, 2025
task_label_projection Public
Automated cell type annotation from rich, labeled reference data

Python 1 MIT 1 2 1 Updated Mar 18, 2025
task_spatial_decomposition Public

Python 0 0 1 0 Updated Mar 6, 2025
task_dimensionality_reduction Public

Python 1 MIT 2 5 1 Updated Mar 6, 2025

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