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Code for timing amplifications

R 5 1 Updated Jun 6, 2024

Web-based SQLite database browser written in Python

Python 3,974 390 Updated Jan 7, 2026

a small, expressive orm -- supports postgresql, mysql, sqlite and cockroachdb

Python 11,891 1,393 Updated Jan 7, 2026

KAUST Academy Artificial Intelligence Summer 2025

Jupyter Notebook 235 32 Updated Sep 10, 2025

Contains my configuration files

Shell 277 20 Updated Jan 4, 2026

20+ high-performance LLMs with recipes to pretrain, finetune and deploy at scale.

Python 13,086 1,397 Updated Jan 7, 2026

Implement a ChatGPT-like LLM in PyTorch from scratch, step by step

Jupyter Notebook 82,514 12,396 Updated Jan 8, 2026

A 4-hour coding workshop to understand how LLMs are implemented and used

Jupyter Notebook 1,059 376 Updated Jan 13, 2025

[CCS'24] A dataset consists of 15,140 ChatGPT prompts from Reddit, Discord, websites, and open-source datasets (including 1,405 jailbreak prompts).

Jupyter Notebook 3,509 317 Updated Dec 24, 2024

Generate random test data for bioinformatics

Rust 27 1 Updated Jun 17, 2024

Cutadapt removes adapter sequences from sequencing reads

Python 568 138 Updated Dec 15, 2025

Styled Terminal Markdown Viewer

Python 1,856 105 Updated May 15, 2024

A collection of familiar, friendly, and modern emoji from Microsoft

Python 9,815 539 Updated Jan 30, 2025

Collection of awesome LLM apps with AI Agents and RAG using OpenAI, Anthropic, Gemini and opensource models.

Python 87,158 12,434 Updated Jan 7, 2026

Interpret text data with LLMs (sklearn compatible).

Python 173 28 Updated Oct 6, 2025

Tool for plotting sequencing data along genomic coordinates.

Python 335 15 Updated Dec 12, 2025
TeX 55 8 Updated Jun 24, 2020

📜 A minimal whiteboard for sketching, annotating and prototyping

JavaScript 21 2 Updated Dec 10, 2025

The minimal and themeable CSS toolkit for flat and clean designs

JavaScript 659 55 Updated Nov 2, 2025

🔮 Micro CSS-inJS library

JavaScript 1 Updated Sep 8, 2024

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

Python 27,738 4,891 Updated Aug 18, 2024

JSorolla is a JavaScript Library for biological and genomic data visualization. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/

JavaScript 42 29 Updated Jan 7, 2026

An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Found a bug or have an idea for a new featur…

Java 176 101 Updated Jan 7, 2026

C++ API & command-line toolkit for working with BAM data

C++ 429 156 Updated May 18, 2025

Adapted session for a one-day training

Shell 2 Updated Dec 12, 2019

Code to dump out any Python object to text in a way that aids debugging / useful logging.

Python 19 4 Updated Mar 22, 2022

code for a white paper on our WIki

Shell 2 1 Updated Jan 24, 2017

Scripts to help analysis of NGS data

Perl 3 3 Updated May 3, 2017

R scripts to plot Venn diagrams for 2,3,4-way Venn from counts

R 4 7 Updated Aug 6, 2018
Jupyter Notebook 10,550 17,379 Updated Aug 1, 2024
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