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Graphormer is a general-purpose deep learning backbone for molecular modeling.

Python 2,200 344 Updated Jun 7, 2024
Jupyter Notebook 1,106 227 Updated Aug 1, 2024

The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of dr…

Python 93 16 Updated Aug 14, 2024

The Official Repo for "Quick Start Guide to Large Language Models"

Jupyter Notebook 234 129 Updated Jan 30, 2025

A foundation model for drug synergy analysis

Python 3 1 Updated Nov 9, 2024

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

Jupyter Notebook 105 24 Updated Jan 31, 2025

Implementation of Self-supervised Graph-level Representation Learning with Local and Global Structure (ICML 2021).

Python 78 19 Updated Jun 9, 2021

pytorch tutorial for beginners

Python 3,002 1,088 Updated Feb 12, 2022

TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design

Jupyter Notebook 175 36 Updated May 6, 2024

꼼꼼한 딥러닝 논문 리뷰와 코드 실습

Jupyter Notebook 1,086 330 Updated Jun 28, 2022

a molecular descriptor calculator

Python 384 97 Updated Feb 7, 2024

Community-Maintained Version of mordred

Python 57 3 Updated Jan 27, 2025

Platform for designing and evaluating Graph Neural Networks (GNN)

Python 1,747 187 Updated Nov 10, 2023

AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA Delivery

Python 28 4 Updated Dec 4, 2024

Strategies for Pre-training Graph Neural Networks

Python 981 162 Updated Jul 29, 2023