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nf-ase Public
Allele Specific Expression pipeline using STAR, WASP and GeneiASE.
Nextflow GNU General Public License v3.0 UpdatedDec 6, 2024 -
gvf2vcf Public
Forked from Test-Blu/GVF2VCF_Convertor_TestBluSuper fast conversion of GVF file format to VCF file format
Python GNU General Public License v3.0 UpdatedOct 11, 2024 -
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nf-configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
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nf-core_modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedAug 26, 2024 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedAug 19, 2024 -
differentialabundance Public
Forked from nf-core/differentialabundanceDifferential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Nextflow MIT License UpdatedApr 1, 2024 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedFeb 25, 2024 -
nf-mixcr Public
A nextflow pipeline for TCR repertoire building with MiXCR
Nextflow GNU General Public License v3.0 UpdatedFeb 19, 2024 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedFeb 5, 2024 -
smrnaseq Public
Forked from nf-core/smrnaseqA small-RNA sequencing analysis pipeline
Nextflow MIT License UpdatedJan 12, 2024 -
mixcr-singularity-container Public
A repo to store singularity version of mixcr docker image
GNU General Public License v3.0 UpdatedJan 4, 2024 -
nf-feelnc Public
A simple nf script to run feelnc module (from FAANG/analysis-TAGADA)
Nextflow GNU General Public License v3.0 UpdatedNov 13, 2023 -
multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
UpdatedJul 31, 2023 -
nf-co.re Public
Forked from nf-core/websiteCode and files for the main nf-core website.
PHP MIT License UpdatedMay 29, 2023 -
nf-core-isoseq Public
Forked from nf-core/isoseqGenome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
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gs-tama Public
Forked from GenomeRIK/tamaGENE SWitCH Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
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ultra Public
Forked from ksahlin/ultrauLTRA is a long-read splice aligner with high accuracy from using a guiding annotation
Python UpdatedJul 6, 2022 -
analysis-isoseq Public
Forked from FAANG/analysis-isoseqGENE-SWitCH project Iso-Seq analysis pipeline
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nf-core_tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedJun 28, 2022 -
DensityMap Public
DensityMap is perl tool for the visualization of features density along chromosomes
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MultiQC_TestData Public
Forked from MultiQC/test-dataTest data for MultiQC. See https://github.com/ewels/MultiQC
HTML MIT License UpdatedNov 22, 2021 -
strobemers Public archive
Forked from ksahlin/strobemersA repository for generating strobemers and evalaution
Python UpdatedSep 20, 2021 -
slaMEM Public archive
Forked from fjdf/slaMEMFinding Maximal Exact Matches (MEMs) using a Sampled LCP Array
C GNU General Public License v3.0 UpdatedAug 4, 2021 -
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TAMA-singularity Public archive
A definition file for building TAMA singularity container
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TAMA-docker Public archive
TAMA Dockerfile
Dockerfile GNU General Public License v3.0 UpdatedApr 26, 2021 -
IsoSeq_v3-singularity Public archive
A definition file for building IsoSeq v3 singularity container
GNU General Public License v3.0 UpdatedFeb 16, 2021 -
SQANTI3-singularity Public archive
A definition file for building SQANTI3 singularity container (adapted from [joelnitta/sqanti3-docker](https://github.com/joelnitta/sqanti3-docker))
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