Workflows, tutorials, and vignettes for pre-processing single-cell RNA-seq. See http://kallistobus.tools/ and

Páll Melsted, A. Sina Booeshaghi, Fan Gao, Eduardo Beltrame, Lambda Lu, Kristján Eldjárn Hjorleifsson, Jase Gehring and Lior Pachter, Modular and efficient pre-processing of single-cell RNA-seq, bioRxiv, 2019, doi.org/10.1101/673285.