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Commits on Sep 23, 2019

• Fix missing package call for BiocGenerics::start

  mojaveazure

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Commits on Sep 20, 2019

• call BiocGenerics::start

  andrewwbutler

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  ea116cd

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• Merge branch 'develop' into release/3.1.1

  mojaveazure

  committed
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• Merge pull request satijalab#2102 from satijalab/fix/activitymatrix

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  andrewwbutler

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• Set search = FALSE as default for AddModuleScore

  mojaveazure

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Commits on Sep 17, 2019

• Merge branch 'develop' into fix/python-umap

  andrewwbutler

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• Merge branch 'develop' into fix/GetResidual_bug

  andrewwbutler

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• Merge branch 'develop' into fix/python-umap

  mojaveazure

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  76951a6

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• minor formatting change

  andrewwbutler

  committed
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• minor message formatting, remove unnecessary CheckDots

  andrewwbutler

  committed
  20f54f2

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• fix bug when replace is false

  yuhanH

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Commits on Sep 16, 2019

• Make searching optional

  mojaveazure

  committed
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Commits on Sep 13, 2019

• Allow using uwot::umap(fast_sgd)

  mojaveazure

  committed
  9915e6f

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• Merge branch 'develop' into fix/python-umap

  mojaveazure

  committed
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• Allow AddModuleScore to update feature lists with new gene symbols

  mojaveazure

  committed
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• Merge branch 'develop' into fix/activitymatrix

  timoast

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  5dfe665

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• Fixes for CreateGeneActivityMatrix

  timoast

  committed
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• Update cc.genes.updated.2019 using UpdateSymbolList

  mojaveazure

  committed
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• Add new gene symbol updater functions

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  mojaveazure

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• Merge branch 'develop' into fix/ModuleScoreWarn

  andrewwbutler

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Commits on Sep 12, 2019

• fix problem with cbind hanging for MapQuery

  andrewwbutler

  committed
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• Merge branch 'develop' into fix/ModuleScoreWarn

  mojaveazure

  committed
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• Add updated cell cycle gene symols

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  mojaveazure

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Commits on Sep 11, 2019

• Apparently, we need to pass the dots

  mojaveazure

  committed
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Commits on Sep 10, 2019

• remove extra comma

  andrewwbutler

  committed
  2d91702

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• Fixes issue when adding non-existant meta.features

  Show description for 5ce18d1
  mojaveazure

  committed
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• Add support for dimensional reduction information stored as groups instead of a complex object

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  mojaveazure

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• warn for features not present in AddModuleScore

  andrewwbutler

  committed
  de31962

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• isolate python-dependent seed setting in RunUMAP.default

  andrewwbutler

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Commits on Sep 9, 2019

• bug fix for SCT integration

  andrewwbutler

  committed
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Commits on Sep 4, 2019

• Fix issue where errors would hang convenience plots

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  mojaveazure

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Commits on Aug 30, 2019

• Pass arguments to generic

  mojaveazure

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Commits on Aug 29, 2019

• Use inherits instead of class

  mojaveazure

  committed
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• Merge branch 'develop' into fix/CommandLog

  andrewwbutler

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• ensure that Seurat objects aren't being stored in command logs

  andrewwbutler

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