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single_cell_eQTL Public
Forked from joshsbloom/single_cell_eQTLscripts for sc-eQTL analysis
R UpdatedFeb 7, 2025 -
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CNVpytor Public
Forked from abyzovlab/CNVpytora python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
Python MIT License UpdatedJul 24, 2022 -
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annotation-nf Public
Forked from AndersenLab/annotation-nfAnnotate VCF with snpeff and bcsq
Nextflow UpdatedMar 1, 2022 -
wi-gatk Public
Forked from AndersenLab/wi-gatkThe new GATK-based pipeline for wild isolate C. elegans strains
Nextflow UpdatedFeb 16, 2022 -
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vartrix Public
Forked from 10XGenomics/vartrixSingle-Cell Genotyping Tool
Rust MIT License UpdatedFeb 22, 2021 -
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popgen_utilities Public
Population genetics utilities used for Boocock et al 2019
Python UpdatedOct 26, 2020 -
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swabseq Public
Forked from joshsbloom/swabseqUCLA Swabseq Software
Jupyter Notebook MIT License UpdatedAug 18, 2020 -
pangolin Public
Forked from cov-lineages/pangolinSoftware package for assigning SARS-CoV-2 genome sequences to global lineages.
Python GNU General Public License v3.0 UpdatedJul 29, 2020 -
iqtree2 Public
Forked from iqtree/iqtree2NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
C++ GNU General Public License v2.0 UpdatedJul 17, 2020 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedMay 19, 2020 -
igv-reports Public
Forked from igvteam/igv-reportsPython application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
Python MIT License UpdatedMay 9, 2020 -
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nextstrain.org Public
Forked from nextstrain/nextstrain.orgThe Nextstrain website
JavaScript UpdatedApr 10, 2020 -
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toil Public
Forked from DataBiosphere/toilA scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python
Python Apache License 2.0 UpdatedDec 18, 2018 -
samtools Public
Forked from samtools/samtoolsTools (written in C using htslib) for manipulating next-generation sequencing data
C Other UpdatedDec 11, 2018 -
seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R GNU General Public License v3.0 UpdatedSep 10, 2018
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