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Treangen Lab

Treangen Lab @ Rice University

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  1. methphaser methphaser Public

    MethPhaser: methylation-based haplotype phasing of human genomes

    Python 43 1

  2. emu emu Public

    Python 41 5

  3. Olivar Olivar Public

    Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens

    Python 23 2

  4. lemur lemur Public

    Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

    Python 22 1

  5. rhea rhea Public

    Recognizing HGT Events in Assemblies

    Python 9

  6. radmicrobes radmicrobes Public

    2023 RAD microbes boot camp

    HTML 9

Repositories

Showing 10 of 14 repositories
  • emu Public
    treangenlab/emu’s past year of commit activity
    Python 41 MIT 5 3 3 Updated Jan 20, 2025
  • radmicrobes Public

    2023 RAD microbes boot camp

    treangenlab/radmicrobes’s past year of commit activity
    HTML 9 MIT 0 0 0 Updated Dec 26, 2024
  • Olivar Public

    Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens

    treangenlab/Olivar’s past year of commit activity
    Python 23 GPL-3.0 2 8 1 Updated Dec 11, 2024
  • treangenlab.github.io Public

    Treangen lab website

    treangenlab/treangenlab.github.io’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Nov 18, 2024
  • sampling-scheme-analysis Public
    treangenlab/sampling-scheme-analysis’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Nov 16, 2024
  • InfA-amplicon Public

    Amplicon sequencing of influenza A

    treangenlab/InfA-amplicon’s past year of commit activity
    1 GPL-3.0 0 0 0 Updated Sep 16, 2024
  • lemur Public

    Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

    treangenlab/lemur’s past year of commit activity
    Python 22 MIT 1 2 0 Updated Sep 13, 2024
  • magnet Public
    treangenlab/magnet’s past year of commit activity
    Jupyter Notebook 8 0 4 0 Updated Aug 20, 2024
  • methphaser Public

    MethPhaser: methylation-based haplotype phasing of human genomes

    treangenlab/methphaser’s past year of commit activity
    Python 43 MIT 1 10 1 Updated Jul 17, 2024
  • crykey_analysis_scripts Public
    treangenlab/crykey_analysis_scripts’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 2, 2024
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