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pyGenomeTracks Public
Forked from deeptools/pyGenomeTrackspython module to plot beautiful and highly customizable genome browser tracks
Python GNU General Public License v3.0 UpdatedMar 22, 2022 -
kallisto Public
Forked from pachterlab/kallistoNear-optimal RNA-Seq quantification
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genomepy Public
Forked from vanheeringen-lab/genomepygenes and genomes at your fingertips
Python MIT License UpdatedNov 18, 2021 -
nanopolish Public
Forked from jts/nanopolishSignal-level algorithms for MinION data
C++ MIT License UpdatedNov 15, 2021 -
circlize Public
Forked from jokergoo/circlizeCircular visualization in R
R Other UpdatedNov 13, 2021 -
ViennaRNA Public
Forked from ViennaRNA/ViennaRNAThe ViennaRNA Package
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ChIPseeker Public
Forked from YuLab-SMU/ChIPseeker🎯 ChIP peak Annotation, Comparison and Visualization
R UpdatedNov 10, 2021 -
SchwartzLab_ToolBox Public
Forked from SchwartzLab/SchwartzLab_ToolBoxA set of programs, and scripts that make our life easier analyzing biological data. Python, R and more progLangs
HTML MIT License UpdatedNov 4, 2021 -
EpiNano Public
Forked from novoalab/EpiNanoDetection of RNA modifications from Oxford Nanopore direct RNA sequencing reads
Python GNU General Public License v2.0 UpdatedOct 25, 2021 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedOct 18, 2021 -
dask-tutorial Public
Forked from dask/dask-tutorialDask tutorial
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 14, 2021 -
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Training-modules Public
Forked from hbctraining/Training-modulesMaterials for short, half-day workshops
HTML UpdatedSep 27, 2021 -
rerio Public
Forked from nanoporetech/rerioResearch release basecalling models and configurations
Python Other UpdatedSep 23, 2021 -
seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R GNU General Public License v3.0 UpdatedAug 27, 2021 -
exomePeak2 Public
Forked from ZW-xjtlu/exomePeak2Bias aware peak calling and quantification for MeRIP-Seq
R UpdatedAug 24, 2021 -
clash Public
Forked from fossabot/clashA rule-based tunnel in Go.
Go GNU General Public License v3.0 UpdatedAug 19, 2021 -
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scRNA.seq.course Public
Forked from hemberg-lab/scRNA.seq.courseAnalysis of single cell RNA-seq data course
TeX GNU General Public License v3.0 UpdatedAug 10, 2021 -
chip-seq-pipeline2 Public
Forked from ENCODE-DCC/chip-seq-pipeline2ENCODE ChIP-seq pipeline
Python MIT License UpdatedAug 6, 2021 -
Roddy Public
Forked from TheRoddyWMS/RoddyThe Roddy workflow development and management system.
Groovy MIT License UpdatedJul 30, 2021 -
MACS Public
Forked from macs3-project/MACSMACS -- Model-based Analysis of ChIP-Seq
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 27, 2021 -
ChIP-seq-analysis Public
Forked from crazyhottommy/ChIP-seq-analysisChIP-seq analysis notes from Ming Tang
Python MIT License UpdatedApr 29, 2021 -
COPILOT Public
Forked from ohlerlab/COPILOTSingle cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.
HTML MIT License UpdatedApr 7, 2021 -
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Intro-to-rnaseq-hpc-O2 Public
Forked from hbctraining/Intro-to-rnaseq-hpc-O2This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
HTML UpdatedMar 23, 2021 -
RADAR Public
Forked from scottzijiezhang/RADARThe project for analyzing differential methylation of MeRIP-seq data
R GNU General Public License v3.0 UpdatedMar 23, 2021 -
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