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Fix the README: We are not using mutual_information in the model.
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PiperOrigin-RevId: 305474614
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Augustin-Zidek authored and diegolascasas committed Apr 8, 2020
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Expand Up @@ -200,7 +200,7 @@ thorough explanation are explained in the section below the table. Note that
| `hhblits_profile` || float32 | `(NR, 22)` | A profile (probability distribution over amino acid types) computed using HHBlits MSA. Encoding: 20 amino acids + 'X' + '-'. |
| `hmm_profile` | ✔️ | float32 | `(NR, 30)` | The HHBlits HHM profile (from the `-ohhm` HHBlits output file). Asterisks in the output are replaced by 0.0. See below. |
| `key` || string | `(1)` | The unique id of the protein. |
| `mutual_information` | ✔️ | float32 | `(NR, NR, 1)` | The average product corrected mutual information. See https://doi.org/10.1093/bioinformatics/btm604. |
| `mutual_information` | | float32 | `(NR, NR, 1)` | The average product corrected mutual information. See https://doi.org/10.1093/bioinformatics/btm604. |
| `non_gapped_profile` | ✔️ | float32 | `(NR, 21)` | A profile from amino acids only (discounting gaps). See below. |
| `num_alignments` | ✔️ | int64 | `(NR, 1)` | The number of HHBlits multiple sequence alignments. Has to be repeated `NR` times. See below. |
| `num_effective_alignments` || float32 | `(1)` | The number of effective alignments (neff at 62 % sequence similarity). |
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