Set norm.method to LogNormalize for FindMarkers.SCTAssay to ensure ex…

…pm1()
weixiao1991 · Nov 7, 2022 · 691e31a · 691e31a
1 parent 5c25215
commit 691e31a
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/R/differential_expression.R b/R/differential_expression.R
@@ -784,6 +784,7 @@ FindMarkers.SCTAssay <- function(
     pseudocount.use = pseudocount.use,
     fc.results = fc.results,
     densify = densify,
+    norm.method = 'LogNormalize' # do expm1 on data slot
     ...
   )
   return(de.results)