Merge pull request satijalab#663 from satijalab/fix/spatstat

[WIP] Replace {spatstat.core} with {spatstat.explore}
wicky-dot · Nov 7, 2022 · 4ca6522 · 4ca6522
2 parents 9a09a9b + b51d62b
commit 4ca6522
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -68,7 +68,7 @@ Imports:
     sctransform (>= 0.3.4),
     SeuratObject (>= 4.1.2),
     shiny,
-    spatstat.core,
+    spatstat.explore,
     spatstat.geom,
     stats,
     tibble,

diff --git a/NAMESPACE b/NAMESPACE
@@ -666,7 +666,7 @@ importFrom(shiny,sliderInput)
 importFrom(shiny,stopApp)
 importFrom(shiny,updateSelectInput)
 importFrom(shiny,verbatimTextOutput)
-importFrom(spatstat.core,markvario)
+importFrom(spatstat.explore,markvario)
 importFrom(spatstat.geom,ppp)
 importFrom(stats,aggregate)
 importFrom(stats,anova)

diff --git a/NEWS.md b/NEWS.md
@@ -1,6 +1,7 @@
 # Unreleased
 
 ## Changes
+- Replaced import from {spatstat.core} with {spatstat.explore}
 - Fix bug in `FindMarkers()` when using `SCT` assay ([#6856](https://github.com/satijalab/seurat/issues/6586))
 
 # Seurat 4.2.0 (2022-09-21)

diff --git a/R/preprocessing.R b/R/preprocessing.R
@@ -1338,7 +1338,7 @@ RelativeCounts <- function(data, scale.factor = 1, verbose = TRUE) {
 #' @param data Matrix containing the data used as "marks" (e.g. gene expression)
 #' @param ... Arguments passed to markvario
 #'
-#' @importFrom spatstat.core markvario
+#' @importFrom spatstat.explore markvario
 #' @importFrom spatstat.geom ppp
 #'
 #' @export