Cross Comparison Representation Learning for Semi-supervised Segmentation of Cellular Nuclei in Immunofluorescence Staining
- Install Pytorch 1.11.0 and CUDA 10.0
- Clone this repo
git clone https://github.com/rxy1234/CCRL
cd CLSD
- Download CRAG dataset
- Download ISC dataset
- Put the data under
./data/
- Divide the dataset into six folders
myTest_Data
myTest_Label
myTraining_Data
myTraining_Label
myValid_Data
myValid_Label
- Fill the folder
myTest_Label
with images with pixel values of all 0 corresponding to the foldermyTest_Data
- Open
ema_train.txt
in the folderscripts
- Copy content after modifying parameters
- Open the terminal and
cd 'the path of the current project'
- Paste the copied operation command and run it
- Download Test dataset
- Put the test data under
./data/
- Download Parameter
- Put the parameter under
./exp/
- Open
ema_test.txt
in the folderscripts
- Copy content after modifying parameters
- Open the terminal and
cd 'the path of the current project'
- Paste the copied operation command and run it
Some code is reused from the Pytorch implementation of mean teacher.