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Commits on Nov 18, 2022

• merge fix

  AustinHartman

  committed
  418d494

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• update docs

  AustinHartman

  committed
  83f6a20

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Commits on Nov 14, 2022

• Fix for FindMarkers to register normalization method when run post Integration/Transfer

  saketkc

  committed
  0e94e18

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Commits on Nov 9, 2022

• merge upstream

  pmarks

  committed
  2b3584c

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• update assay names, correctly filter transcripts

  pmarks

  committed
  20c0b15

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• update docs, cran checks

  AustinHartman

  committed
  b23ae2e

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Commits on Nov 8, 2022

• fix merge conflict

  AustinHartman

  committed
  d6d085b

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Commits on Nov 7, 2022

• Merge branch 'develop' of https://github.com/satijalab/seurat-private into develop

  AustinHartman

  committed
  7ca79bb

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• Merge branch 'develop' into fix/spatstat

  AustinHartman

  authored
  b51d62b

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• Use mean.fxn for FindMarkers.SCTAssay

  saketkc

  committed
  6742903

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• Fix FindMarkers for SCT

  saketkc

  committed
  755a6bf

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• Set norm.method to LogNormalize for FindMarkers.SCTAssay to ensure expm1()

  saketkc

  committed
  691e31a

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• Use mean.fxn for FindMarkers.SCTAssay

  saketkc

  committed
  8f98270

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Commits on Nov 5, 2022

• Fix FindMarkers for SCT

  saketkc

  committed
  20db789

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Commits on Nov 4, 2022

• Set norm.method to LogNormalize for FindMarkers.SCTAssay to ensure expm1()

  saketkc

  committed
  4191e33

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Commits on Oct 25, 2022

• Replace {spatstat.core} with {spatstat.explore}

  mojaveazure

  committed
  438f04f

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Commits on Oct 11, 2022

• Fixed loading multiple outs, and load controls into separate assays

  jsicherman

  committed
  ec44c18

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Commits on Oct 7, 2022

• Optional loading, and data.table

  jsicherman

  committed
  c116812

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• Check cells.highlight is not dataframe; satijalab#6505

  timoast

  committed
  f42a33f

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Commits on Sep 29, 2022

• fix merge conflicts

  AustinHartman

  committed
  356b3b8

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Commits on Sep 26, 2022

• ImageFeaturePlot fix

  AustinHartman

  committed
  d177124

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Commits on Sep 21, 2022

• 4.2.0

  AustinHartman

  committed
  fc285f5

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• Merge pull request satijalab#658 from satijalab/checkmatrix

  Show description for c53699b
  AustinHartman

  authored
  c53699b

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• Merge pull request satijalab#650 from satijalab/feat/foldchange

  Show description for 38af263
  AustinHartman

  authored
  38af263

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Commits on Sep 20, 2022

• Add back check.matrix

  timoast

  committed
  ef07a34

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• Ensure cells are character vector

  timoast

  committed
  c4a5fd3

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Commits on Sep 14, 2022

• wip

  pmarks

  committed
  6caa7b8

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• first cut of Xenium loader

  pmarks

  committed
  967f2bc

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Commits on Sep 2, 2022

• Remove pseudocount.use from Seurat method:

  timoast

  committed
  1bf7bba

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• Tweaks for pseudocount.use and normalization methods for FindMarkers and

  Show description for 71193c0
  mojaveazure

  committed
  71193c0

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Commits on Sep 1, 2022

• set pseudocount.use to null at seurat level

  AustinHartman

  committed
  dbe7ff3

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Commits on Aug 31, 2022

• fix merge conflict

  AustinHartman

  committed
  f850d21

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Commits on Aug 29, 2022

• fix merge conflicts

  AustinHartman

  committed
  fbac29b

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Commits on Aug 26, 2022

• Merge branch 'develop' into foldchange

  timoast

  authored
  6411669

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• Merge branch 'develop' of github.com:satijalab/seurat-private into develop

  timoast

  committed
  a17c3ca

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