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fix typo
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zskylarli committed Nov 16, 2023
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Expand Up @@ -154,7 +154,7 @@ By integrating all samples together, we can now compare healthy and diabetic cel

After we aggregate cells, we can perform celltype-specific differential expression between healthy and diabetic samples using DESeq2. We demonstrate this for CD14 monocytes.

```{rE}
```{r}
bulk <- AggregateExpression(object, return.seurat = T, slot = 'counts',
assays = 'RNA', group.by = c("celltype.full","sample", 'disease'))
```
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