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Commits on Nov 16, 2023

• update de_vignette.Rmd with new AggregateExpression meta.data

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Commits on Nov 15, 2023

• Merge pull request satijalab#880 from satijalab/fix/fetch_data_nas

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• bump version

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• update dimplot to handle NAs in split.by variable

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• Merge pull request satijalab#873 from satijalab/fix/aggregate_expression

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• Merge branch 'develop' into fix/aggregate_expression

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• update message slightly

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• bump version

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• update vignette object path

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Commits on Nov 13, 2023

• update Parse vignette

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• update to handle group.by containing missing meta.data and update numeric conversion warning

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Commits on Nov 10, 2023

• update vignette

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Commits on Nov 9, 2023

• add meta data when returning seurat object with AggregateExpression

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• add g to column/cell names when pseudobulking if group.by is numeric

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Commits on Oct 23, 2023

• update documentation for logfc.threshold=0.25

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Commits on Oct 20, 2023

• Merge branch 'seurat5_devel' of github.com:satijalab/seurat-private into seurat5_devel

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• AverageExpression docs minor fix

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Commits on Oct 18, 2023

• Merge branch 'avg_expression_fix' into seurat5_devel

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• fix indents

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• formatting fixes

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• fix tests

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• fix naming of cells with AggregateExpression, add warning when replacing underscore with dashes

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• slot to layer fix

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• add PseudobulkExpression.Seurat that both AverageExpression and AggregateExpression call

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Commits on Oct 17, 2023

• supresswarnings within DietSeurat

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• ignore warnings within AverageExpression for HTODemux

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• update AverageExpression docs and warnings

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Commits on Oct 13, 2023

• fix warnings if correct layer not found in ScaleData and PrepDR5

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• Merge pull request satijalab#790 from satijalab/fix/GroupBy_Integration

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Commits on Oct 6, 2023

• update internal function name/description

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Commits on Oct 4, 2023

• add BPcells PCAtest

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• Merge pull request satijalab#802 from satijalab/feat/average_expression

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• Merge branch 'seurat5_devel' into feat/average_expression

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• bump version

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• Merge branch 'seurat5_devel' into feat/average_expression

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