Best Payment Processing Software

Compare the Top Payment Processing Software as of December 2025

What is Payment Processing Software?

Payment processing software is software used to facilitate payments made to and from businesses. It can process these transactions quickly and securely, allowing merchants to run their operations smoothly. The software is often integrated with point-of-sale systems or accounting programs, allowing for seamless tracking of all financial information. Users can easily manage payment gateways, report on transactions, and reconcile accounts with detailed analytics tools. Compare and read user reviews of the best Payment Processing software currently available using the table below. This list is updated regularly.

  • 1
    FreshBooks

    FreshBooks

    FreshBooks

    FreshBooks makes getting paid speedy and straightforward. Offer credit cards payrments, Apple Pay, and bank transfers to your clients and get paid twice as fast. Plus, save time with automatic payment recording and invoice matching. Try it Free or save 70% on FreshBooks Now.
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    Starting Price: $6.30/month
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  • 2
    Synder

    Synder

    Synder

    One of the best accounting software for small businesses, Synder is the right solution for those who seek high-quality service, 24/7 support, and advanced automated features. After you connect all of your sales channels and payment platforms, you will be provided with automatic bookkeeping, which guarantees precise and error-free synchronization of your transaction data, categorization, and live data reconciliation within a single interface. Synder makes accurate records of your payment data without duplicates. Detailed and 100% correct Profit and Loss Reports contain additional helpful information to analyze your business’ cash flow and budget planning. The software runs smoothly and automatically, and there is no need to log in to get it done. Synder lets you apply sales taxes, taxes based on location, shipping address, product name, etc. Recurring invoices remind customers of regular payments. Synder offers a free trial and a demo to learn more about this breakthrough software.
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    Starting Price: $39.99 per month
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    Quadient AP Automation by Beanworks
    Quadient AP Automation by Beanworks empowers accounting teams by automating the entire accounts payable workflow, from purchase to payments. We receive and code your invoices, route them for approval, and sync them into your accounting software. Once invoices have been approved, they automatically match to payments, helping eliminate the risk of duplicates and ensuring your vendors get paid on time. By combining AP data, invoice images and reporting, you gain better visibility into outstanding liabilities across all of your legal entities or locations. Quadient AP Automation by Beanworks helps accounting teams: -Increase control over AP -Improve visibility across payables -Eliminate paper & filing cabinets -Improve accountability & easily find invoices -Access and approve invoices from any device Quadient AP Automation by Beanworks integrates with industry-leading accounting software including QuickBooks, Intacct, Sage 100, Sage 300, Sage 50 Canada & US, NetSuite & more
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    Biller Genie

    Biller Genie

    Biller Genie

    About Biller Genie Biller Genie is an award-winning, cloud-based accounts receivable automation and e-invoicing solution that automates accounts receivable from bill presentment, follow up, collection, and reconciliation - without changing your current process. Biller Genie integrates directly with your accounting software, so there is no new software to learn and you can keep your existing payments processor. The Genie does all of the heavy lifting for you. Simply hit save and we take over from there - sending out invoices via email or paper mail, following up with reminders on your custom schedule, accepting payments online via credit card, ACH, and Apple Pay, and reconciling payments back into your accounting software. Our average subscriber sees a 40% reduction in overdue invoices, gets paid 15 days faster, and saves 10-20 hours of administrative work per week. Your account can be set up in less than 15 minutes.
    Starting Price: $49.95/mo + 0.50% per invoice collected
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    Tipalti

    Tipalti

    Tipalti

    The only solution to automate your end-to-end payables process. Automate your full accounts payable, global payouts, procurement and employee expense processes with Tipalti and eliminate 80% of your manual workload. Tiplati enables you to onboard suppliers, partners and freelancers with ease, streamline PO generation, accelerate approvals, eliminate invoice entry and make fast global payments to 190 countries in local currency. Also includes global tax compliance, 2 & 3 way PO matching, multi-entity support, and instant reconciliation with ERP integrations that include NetSuite, Xero, Quickbooks and Sage Intacct.
    Starting Price: $129 USD, £119 GBP, €129 EUR
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    QBILLY

    QBILLY

    QBILLY

    Our cloud-based AP software automates invoice processing and enhances your existing accounts payable financial software to create a seamless platform that allows your accounts payable department personnel to work from anywhere, remotely or in the office, without purchasing expensive accounting software. QBILLY provides a secure, simple, and cloud-based AP add-on solution for receiving, tracking, routing, approving, archiving, and paying vendor invoices while integrating with most accounting software systems. Our software provides you with wizards to easily configure the system to work the way you want it to work. Also, our software allows you to connect your financial stakeholders to AP information with a cost effective and flexible solution that is accessible from anywhere and from any device. This software will eliminate manual processes to reduce the number of accounting errors and allowing you to become more productive, reduce costs, and go paperless.
    Starting Price: $14.99 per month
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    ChargeOver

    ChargeOver

    ChargeOver

    ChargeOver is a web-based standalone billing and invoicing software solution for businesses across industries. Affordable and feature-rich, this recurring billing and payments platform offers a host of functionalities including a self-service customer portal, standard or customized reporting, billing or invoicing setup options, and branding options for billing-related communications. By using ChargeOver, you can improve your service to customers, save time, and increase cash flow by automating recurring payments and subscriptions. Additional features include automated dunning; phone, chat, and email support; fully searchable database; customer payment portal, custom payment links; and more.
    Starting Price: $0
  • 8
    ezyCollect

    ezyCollect

    ezyCollect

    If you're looking to improve your accounts receivables and cashflow, turn to to ezyCollect, a secure, cloud-based accounts receivable and debtor management solution. Trusted by more than 1,000 companies worldwide, ezyCollect automates the tedious tasks in accounts receivables so that organizations can spend their precious resources on their core business. It comes with a host of features to help businesses get paid faster and easier, including pre-reminder communications, overdue reminders, online payment processing, and escalation to debt collection. The platform also integrates with leading accounting software, Xero and myob.
    Starting Price: $25.00/month
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    FINSYNC

    FINSYNC

    FINSYNC

    FINSYNC’s mission is to help small to midsize businesses grow and succeed with innovative software and unmatched service. Our payments platform helps businesses centralize control of payments, and our complete solution for payments, invoicing, bill pay, payroll, accounting, financing, cash flow management and services helps businesses grow in new and empowering ways. We deliver unmatched service through a virtual community of specialists who share our commitment to helping entrepreneurs succeed. Get matched with a financial professional that’s best positioned to help you grow for unrivaled support with bookkeeping, accounting, human capital management, financial analysis and corporate strategy. Businesses that use FINSYNC benefit from improved operational efficiency, lower operating costs, better analytics, better service and quicker access to lower-cost capital delivered through the FINSYNC Lending Network.
    Starting Price: $10.00/month
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    Peakflo

    Peakflo

    Peakflo

    Streamline bill payments & invoice collections. Put your accounts payable & receivable on auto-pilot. Spend more time growing your business, and less on managing your payments. Create Purchase Quote and streamline the approval process before sending it to the vendor. PO Matching to vendor invoice and track open/closed PO with budgets. Capture vendor invoice details automatically or manually and make payments confidently at 0% FX markup. Create professional draft invoices and allow customers to confirm the amount before you invoice them. Set up smart workflows with automated WhatsApp and email reminders. Say goodbye to spreadsheets. Leverage the dashboard, detailed out-of-the-box reports, and customer timelines to stay up to date. Integrated task management. Centralized workspace with promise-to-pay tasks and actions that allow your team to follow up with customers with a click. Two-way integration with your accounting software.
    Starting Price: $1,120 per month
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    Medius

    Medius

    Medius

    Simplicity shouldn’t be complicated. Medius makes AP autonomous—using intelligent technology to reimagine how invoices move into and through your business via a process that you don’t have to touch and that gets smarter with every step. Automate the entire source-to-pay process with the Medius Accounts Payable suite. Simplify and automate your entire AP process by removing paper and manual invoice keying, matching, and processing. You’ll always have full visibility of invoices, spend and cash flow to ensure you can close the books on time, every time. Remove complexity, reduce fraud and save money by improving the payments process in your organization. Medius Pay overhauls the way you pay your suppliers, removing manual processes such as processing checks, and promotes automated working instead. Empower your procurement team with the tools they need to eliminate maverick spend.
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    Circulus

    Circulus

    Circulus

    At Circulus, we provide Product and Service Offerings designed to Optimize, Augment, and Automate AP Processes. Circulus has developed Cloud-Based and Robust End-to-End AP Solution for companies of all sizes and complexities. Circulus empowers AP Teams with: • Complete Visibility Through Real-Time Data Retrieval, Dashboards, Task Notifications & Reports • Tight Control Through Timestamped Audit trails & Role-Based Access • Easy Accessibility Through Digitized Invoices, Cloud-Based Portal, Bill Status Search & Accounts Payable Mobile App • Smooth Coordination Through Automated Workflows & Centralized Processing • Flexibility Through Multiple Payment Methods, Scalability, Configurable Workflows & Business Rules • Speed & Accuracy Through Intelligent Data Extraction & 99% Data Accuracy Guaranteed from Day 1
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    Invoiced

    Invoiced

    Invoiced.com

    Put A/R on autopilot. Get paid faster, waste less time and provide a better payment experience with the Invoiced A/R Cloud. Go from invoice to cash faster with less effort. Businesses that use Invoiced get paid 14 days faster, on average. Waste less time on collections processes with automated email, letter and text communications. Provide a better payment experience for customers with a modern frictionless portal. Automate financial processes with our award-winning A/R Cloud. The Invoiced A/R Cloud lets you program your entire accounts receivable operation, complete with dashboards, integrated reporting and specialized tools for efficient, effective A/R management. Online payments have accelerated the speed of many modern businesses — but not all have jumped on board. Some are still losing weeks to snail mail, and sacrificing positive cash flow in the process.
    Starting Price: $100 per month
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    Agicap

    Agicap

    Agicap

    By centralizing your cash flows and automating tasks, Agicap allows you to focus on the essentials, analysis, and decision-making. Build your cash flow forecast and monitor the achievement of your targets. Visualize your cash position by synchronizing your bank accounts and business tools. Improve overall productivity with automated, centralized, and harmonized cash management. Use a comprehensive collaborative tool and consolidate all your data. Anticipate your cash flow at the consolidated level or entity level. Consolidate and monitor your cash flow from multiple banks, entities, and business tools with ease. Set up automated cash forecasts and explore scenarios. Create custom dashboards to improve your analysis and reporting. Let Agicap automatically categorize all your banking transactions. Monitor the differences between the actuals and the forecast in real-time. Build a reliable forecast and make fully informed decisions at the right time.
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     Yokoy

    Yokoy

    Yokoy

    Based on all your receipts, vendor invoices and actions, the Yokoy tool learns and is able to automatically fill out expense forms and invoices including VAT for you. Yokoy finds outliers, rule violations and potential fraudulent cases and sends them for manual review. The rest - from submission to exporting to your accounting system - is fully automated. Yokoy is the only expense management tool that allows you to map your individual company-specific process flow without a team of developers to code and maintain it for you. Robust integrations are key to automating the data flow between different tools. Yokoy integrates with all major third-party tools and also provides the free "OpenAPI" platform to all partners and customers.
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    MineralTree

    MineralTree

    MineralTree

    MineralTree provides secure, easy-to-use, end-to-end Accounts Payable and payment automation solutions that reduce costs by more than 75%, increase visibility and control, mitigate fraud and risk, while improving cash flow. More than 2,000 mid-sized companies, as well as more than 25 financial institutions, rely on MineralTree to help transform the finance function from a cost center to a profit center. With MineralTree, you can be up and running in days or weeks.
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    JAMIS Prime ERP

    JAMIS Prime ERP

    JAMIS Software

    JAMIS Prime is simply the most intuitive and agile project ERP solution for government contractors, offering integration across all key components of your business. Using the most modern Cloud ERP technology, Prime enables you to connect with your mobile workforce, customers and other value chain businesses on web-enabled devices of every kind. All JAMIS Prime ERP application suites include dashboards & analytics, document management, advanced security and integration with Microsoft Office features. The integrated document management system allows you to keep business plans, policies, forecasts and procedures online and associate them with ERP transactions to deliver a complete view of your business. Efficient contract management processes are critical to ensuring goods and services are delivered as expected, and engagements are profitable.
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    Cashbook

    Cashbook

    Cashbook

    For companies with high-volume transactions. Built on seamless integration between banks and ERPs. Proven to increase cash flow, eliminate manual processes, reduce DSO, and improve cash visibility. Automate complex financial processes and transform your finance department. One central hub to log all notes, see lockbox images, eliminate deductions and add attachments with real-time information. Intelligent software forecasts payments based on historical performance highlights overdue accounts and automatically creates user-defined dunning letters. Expect higher collections efficiency and expect your companies DSO to plummet. Deductions are claimed by large and small companies with customer-specific codes and reasons. Adapt deduction management to any bank file or remittance format and route deductions for speedy review and approvals. Create reason and deduction codes directly from remittance data, regardless of ERP.
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