Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation

Activity Indicators for Modern C++

Statistics and analysis for variation graphs

Fast Open-Source Search & Clustering engine × for Vectors & 🔜 Strings × in C++, C, Python, JavaScript, Rust, Java, Objective-C, Swift, C#, GoLang, and Wolfram 🔍

Rust language bindings for Faiss

Approximate Nearest Neighbor Search for Sparse Data in Python!

Fast approximate nearest neighbor searching in Rust, based on HNSW index

Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk

lace up GFA files using panSN path name sub-ranges to coordinate the lacing

nanobind: tiny and efficient C++/Python bindings

A collection of libraries for single-pass, distributed, sublinear-space approximate aggregation and sketching algorithms. Currently: HyperLogLog++; more to come.

Molecular Library Toolbox

An extremely fast Python package and project manager, written in Rust.

A cheatsheet of modern C++ language and library features.

PGR-TK: Pangenome Research Tool Kit

Provides a bit-vector, an optimized replacement of the infamous std::vector<:b:ool>. In addition to the bit-vector, the library also provides implementations of STL algorithms tailored for bit-vect…

Java Sketch Characterization Code.

Apache datasketches

Core C++ Sketch Library

Apache datasketches

Parallel Construction of Suffix Arrays in Rust

Extension of dtw-python package implementing Shape DTW algorithm in two multidimensional variants

A shape-embedded dynamic time warping (DTW) algorithm. To the best of our knowledge, shapeDTW beats all other DTW variants on UCR time series datasets.

Fast FASTQ sample demultiplexing in Rust.

Grep for FASTQ files

Tools for fast and flexible genome assembly scaffolding and improvement

Reference-free profiling of polyploid genomes