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CytoCommunity Public
A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
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CytoCommunity_Tutorials Public
Forked from yafeixu-xidian/CytoCommunity_TutorialsPython UpdatedJul 21, 2023 -
OptiCon Public
A general framework for systematic and de novo identification of synergistic key regulators.
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SpaGCN Public
Forked from jianhuupenn/SpaGCNSpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
Python MIT License UpdatedNov 19, 2021 -
CytoTalk Public
A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.
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kgraph Public
Forked from aaalgo/kgraphA library for k-nearest neighbor search
C++ BSD 2-Clause "Simplified" License UpdatedSep 10, 2021 -
ann-benchmarks Public
Forked from erikbern/ann-benchmarksBenchmarks of approximate nearest neighbor libraries in Python
Python MIT License UpdatedAug 25, 2021 -
awesome-single-cell Public
Forked from seandavi/awesome-single-cellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
MIT License UpdatedJul 27, 2021 -
pytorch_geometric Public
Forked from pyg-team/pytorch_geometricGeometric Deep Learning Extension Library for PyTorch
Python MIT License UpdatedJun 19, 2021 -
WEAVESS Public
Forked from Lsyhprum/WEAVESSA Comprehensive Survey and Experimental Comparison of Graph-based Approximate Nearest Neighbor Search
C++ MIT License UpdatedMay 16, 2021 -
snap Public
Forked from snap-stanford/snapStanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.
C++ Other UpdatedMar 21, 2021 -
seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R GNU General Public License v3.0 UpdatedFeb 27, 2021 -
VisCello Public
Forked from tanlabcode/VisCelloViscello for Visualization of Single Cell Data
R UpdatedFeb 21, 2021 -
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Ligand-Receptor-Pairs Public
Forked from LewisLabUCSD/Ligand-Receptor-PairsCompendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
UpdatedNov 24, 2020
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