- https://jianshu93.github.io/blog/
- @jansue_chao
- in/jianshu-zhao-9a14a021a
- https://scholar.google.com/citations?user=XFhxv0gAAAAJ&hl=en
- https://knightlab.ucsd.edu/wordpress/?page_id=47
-
-
-
-
graphembed Public
Forked from jean-pierreBoth/graphembedgraph embedding, density friendly decomposition
Jupyter Notebook UpdatedNov 30, 2024 -
gsearch Public
Forked from jean-pierreBoth/gsearchApproximate nearest neighbour search for microbial genomes based on hash metric
-
-
hypermash Public
Fast and Memory Efficient Genome Sketching via HyperMinHash
-
PhyloDM Public
Forked from aaronmussig/PhyloDMEfficient calculation of phylogenetic distance matrices.
Rust GNU General Public License v3.0 UpdatedNov 25, 2024 -
hnswlib-rs Public
Forked from jean-pierreBoth/hnswlib-rsRust implementation of the HNSW algorithm (Malkov-Yashunin)
-
finch-rs Public
Forked from onecodex/finch-rsA genomic minhashing implementation in Rust
-
minimap2-rs-test Public
Testing minimap2-rs for large-scale sequence alignment
Rust UpdatedNov 24, 2024 -
WITCH Public
Forked from c5shen/WITCHWITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.
Python GNU General Public License v3.0 UpdatedNov 23, 2024 -
bindash Public
Forked from zhaoxiaofei/bindashFast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
-
JianshuZhao-website Public template
Forked from giuliaguidi/gguidi-websiteMinimalist Hugo template for academic websites
HTML MIT License UpdatedNov 23, 2024 -
sufr Public
Forked from TravisWheelerLab/sufrParallel Construction of Suffix Arrays in Rust
Rust BSD 3-Clause "New" or "Revised" License UpdatedNov 22, 2024 -
matchms Public
Forked from matchms/matchmsPython library for processing (tandem) mass spectrometry data and for computing spectral similarities.
Python Apache License 2.0 UpdatedNov 22, 2024 -
-
sam_filter Public
Filter SAM file by sequence identity and alignment ratio
Rust UpdatedNov 18, 2024 -
blog Public
Forked from barryclark/jekyll-nowBuild a Jekyll blog in minutes, without touching the command line.
SCSS MIT License UpdatedNov 15, 2024 -
arrow-rs Public
Forked from apache/arrow-rsOfficial Rust implementation of Apache Arrow
Rust Apache License 2.0 UpdatedNov 13, 2024 -
minimizers Public
Forked from RagnarGrootKoerkamp/minimizersMeasure experimental density of bd-anchors
Rust UpdatedNov 12, 2024 -
annembed_gsearch Public
annembed old version for gsearch integration
Rust Other UpdatedNov 12, 2024 -
-
-
astar-pairwise-aligner Public
Forked from RagnarGrootKoerkamp/astar-pairwise-alignerA pairwise sequence aligner written in Rust
Rust Mozilla Public License 2.0 UpdatedNov 8, 2024 -
-
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedOct 28, 2024 -
GreedyMini Public
Forked from OrensteinLab/GreedyMiniJupyter Notebook MIT License UpdatedOct 28, 2024 -
annembed Public
Forked from jean-pierreBoth/annembeddata embedding based on approximate nearest neighbour
-
mdmcleaner Public
Forked from KIT-IBG-5/mdmcleanerMDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
Python GNU General Public License v3.0 UpdatedOct 27, 2024