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Showing results

Rust crate to deal with phylogenetic trees

Rust 10 3 Updated Sep 27, 2024

Fast and accurate Phylogeny estimation with self-attention Networks

Python 26 5 Updated Jun 28, 2024

Cdbgtricks is a modular tool for updating a compacted de Bruijn Graph.

C++ 8 1 Updated Dec 1, 2024

Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all

Rust 36 4 Updated Dec 3, 2024

A gap-closing software tool that uses long reads to enhance genome assembly.

C++ 185 13 Updated Sep 6, 2024

Minimalist Hugo template for academic websites

HTML 1 1 Updated Nov 23, 2024

Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

C++ 3 1 Updated Nov 23, 2024

Parallel Construction of Suffix Arrays in Rust

Rust 10 1 Updated Dec 3, 2024

mzmine source code repository

Java 196 129 Updated Dec 4, 2024

Pipeline for analyzing (rare) mutations in metagenome-assembled genomes

Python 10 2 Updated Sep 16, 2024
C++ 2 9 Updated Nov 14, 2023

DSRC - DNA Sequence Reads Compressor

C++ 56 19 Updated May 20, 2022

Official Rust implementation of Apache Arrow

Rust 2,638 810 Updated Dec 4, 2024

A k-mer search engine for all Sequence Read Archive public accessions

18 Updated Oct 29, 2024
Rust 10 1 Updated Nov 26, 2024

GBWT in Rust

Rust 42 4 Updated Nov 27, 2024

Fast Approximate Membership Filters (C++)

C++ 263 25 Updated Jan 9, 2024
Jupyter Notebook 7 1 Updated Oct 28, 2024

Automated strain separation of low-complexity metagenomes

Python 51 5 Updated Nov 10, 2021

MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs

Python 21 8 Updated Mar 19, 2023

PacBio BAM toolkit

39 2 Updated Oct 29, 2024

Rust cache structures and easy function memoization

Rust 1,594 96 Updated Nov 14, 2024

parallel c prinseq

C++ 19 4 Updated Aug 10, 2022

Official home of genome aligner based upon notion of Cactus graphs

C 529 111 Updated Nov 25, 2024

Spectral library searching using approximate nearest neighbor techniques.

Jupyter Notebook 42 19 Updated Jul 24, 2024

Woltka: a versatile meta'omic data classifier

Python 71 25 Updated Oct 8, 2024

A napari plugin to process and analyse images with chatGPT!

CSS 252 26 Updated Oct 19, 2024

indels and complex variants prediction from SKA skf files

Rust 4 1 Updated Oct 5, 2024

A fast, AVX2 and ARM Neon accelerated FM index library

C 31 5 Updated Aug 13, 2024

Rust port of Spice, a low-overhead parallelization library

Rust 569 8 Updated Oct 9, 2024
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