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Intro_to_Linux_for_HPC Public
Forked from vari-bbc/Intro_to_Linux_for_HPC -
wgscovplot Public
Forked from CFIA-NCFAD/wgscovplotThe Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth information, variants and DNA Gene features
JavaScript Other UpdatedSep 17, 2024 -
sbatchtools Public
sbatchtools is a suite of shell scripts to automate slurm submissions (based on www.github.com/LeeLMarshall/qsubtools)
Shell UpdatedAug 28, 2024 -
Flye Public
Forked from mikolmogorov/FlyeDe novo assembler for single molecule sequencing reads using repeat graphs
C Other UpdatedAug 28, 2024 -
escape Public
Forked from BorchLab/escapeEasy single cell analysis platform for enrichment
R MIT License UpdatedAug 15, 2024 -
seurat-wrappers Public
Forked from satijalab/seurat-wrappersCommunity-provided extensions to Seurat
R GNU General Public License v3.0 UpdatedAug 1, 2024 -
seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R Other UpdatedJul 3, 2024 -
scDblFinder Public
Forked from plger/scDblFinderMethods for detecting doublets in single-cell sequencing data
R GNU General Public License v3.0 UpdatedMar 4, 2024 -
scCustomize Public
Forked from samuel-marsh/scCustomizeR package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
R GNU General Public License v3.0 UpdatedFeb 29, 2024 -
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sc-type Public
Forked from IanevskiAleksandr/sc-typeHTML GNU General Public License v3.0 UpdatedJan 30, 2024 -
Biscuit_Snakemake_Workflow Public
Forked from huishenlab/Biscuit_Snakemake_WorkflowSnakemake Workflow For Running Biscuit https://github.com/huishenlab/biscuit
Python GNU General Public License v3.0 UpdatedDec 6, 2023 -
biscuiteer Public
Forked from trichelab/biscuiteertools for analysing Biscuit (https://huishenlab.github.io/biscuit/) output
R UpdatedDec 6, 2023 -
biscuit Public
Forked from huishenlab/biscuitBISulfite-seq CUI Toolkit
C Other UpdatedNov 28, 2023 -
ALS_SpinalCord_QTLs Public
Forked from jackhump/ALS_SpinalCord_QTLsData Portal for NYGC ALS Spinal Cord
HTML UpdatedAug 30, 2023 -
rnaseq_workflow Public
Forked from vari-bbc/rnaseq_workflowsnakemake workflow for bulk RNA-seq workflow using STAR-edgeR
Python GNU General Public License v3.0 UpdatedAug 17, 2023 -
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str-analysis Public
Forked from broadinstitute/str-analysisScripts and utilities related to analyzing short tandem repeats (STRs).
Python MIT License UpdatedApr 12, 2023 -
STRling Public
Forked from quinlan-lab/STRlingDetect novel (and reference) STR expansions from short-read data
Nim MIT License UpdatedMar 31, 2023 -
pathExplore Public
Forked from kerseviciute/aPEARGene Set Enrichment Clustering Plots
R MIT License UpdatedFeb 17, 2023 -
geneimpacts Public
Forked from brentp/geneimpactsprioritize effects of variant annotations from VEP, SnpEff, et al.
Python MIT License UpdatedJan 31, 2023 -
miniwdl Public
Forked from chanzuckerberg/miniwdlWorkflow Description Language developer tools & local runner
Python MIT License UpdatedJan 24, 2023 -
gatk-sv Public
Forked from broadinstitute/gatk-svA structural variation pipeline for short-read sequencing
WDL BSD 3-Clause "New" or "Revised" License UpdatedDec 20, 2022 -
Single-Cell-RNA-Boost Public
Forked from JumpcodeGenomics/Single-Cell-RNA-BoostJupyter Notebook UpdatedDec 16, 2022 -
warp Public
Forked from broadinstitute/warpWDL Analysis Research Pipelines
WDL BSD 3-Clause "New" or "Revised" License UpdatedNov 16, 2022 -
hts-specs Public
Forked from samtools/hts-specsSpecifications of SAM/BAM and related high-throughput sequencing file formats
TeX UpdatedNov 15, 2022 -
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ggpackets Public
Forked from dgkf/ggpacketsCleaner composition of ggplot layers
R Other UpdatedJun 27, 2022 -
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scGate Public
Forked from carmonalab/scGatemarker-based purification of cell types from single-cell RNA-seq datasets
R UpdatedJun 24, 2022
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