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refined-github Public
Forked from refined-github/refined-github
Browser extension that simplifies the GitHub interface and adds useful features
TypeScript MIT License UpdatedDec 8, 2024 -
Peak_analysis_workshop Public
Forked from hbctraining/Peak_analysis_workshopAn introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
Shell Creative Commons Zero v1.0 Universal UpdatedDec 6, 2024 -
coSMicQC Public
Forked from WayScience/coSMicQCSingle cell Morphology Quality Control (coSMicQC)
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 23, 2024 -
Training-modules Public
Forked from hbctraining/Training-modulesMaterials for short, half-day workshops
Jupyter Notebook Other UpdatedNov 20, 2024 -
bionemo-framework Public
Forked from NVIDIA/bionemo-frameworkBioNeMo Framework: For building and adapting AI models in drug discovery at scale
Python Other UpdatedNov 19, 2024 -
boltz Public
Forked from jwohlwend/boltzOfficial repository for the Boltz-1 biomolecular interaction model
Python MIT License UpdatedNov 17, 2024 -
alphafold3 Public
Forked from google-deepmind/alphafold3AlphaFold 3 inference pipeline.
Python Other UpdatedNov 13, 2024 -
STdeconvolve Public
Forked from JEFworks-Lab/STdeconvolveReference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
R UpdatedNov 10, 2024 -
FastQ-Screen Public
Forked from StevenWingett/FastQ-ScreenDetecting contamination in NGS data and multi-species analysis
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scplotter Public
Forked from pwwang/scplotterscplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
R GNU General Public License v3.0 UpdatedOct 22, 2024 -
awesome_spatial_omics Public
Forked from crazyhottommy/awesome_spatial_omicstools and notes for spatial omics
UpdatedOct 11, 2024 -
scvi-tools Public
Forked from scverse/scvi-toolsDeep probabilistic analysis of single-cell and spatial omics data
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 11, 2024 -
scCustomize Public
Forked from samuel-marsh/scCustomizeR package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
R GNU General Public License v3.0 UpdatedOct 1, 2024 -
KAZU Public
Forked from AstraZeneca/KAZUFast, world class biomedical NER
Python Apache License 2.0 UpdatedSep 2, 2024 -
admet_ai Public
Forked from swansonk14/admet_aiTraining and prediction scripts for Chemprop models trained on ADMET datasets
HTML MIT License UpdatedAug 23, 2024 -
Cascade Public
Forked from HelmchenLabSoftware/CascadeCalibrated inference of spiking from calcium ΔF/F data using deep networks
Jupyter Notebook GNU General Public License v3.0 UpdatedAug 22, 2024 -
ArchRtoSignac Public
Forked from swaruplabUCI/ArchRtoSignacAn R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
R MIT License UpdatedAug 22, 2024 -
jsoncrack.com Public
Forked from AykutSarac/jsoncrack.com✨ Innovative and open-source visualization application that transforms various data formats, such as JSON, YAML, XML, CSV and more, into interactive graphs.
TypeScript Other UpdatedAug 20, 2024 -
The Chemistry Development Kit
Java GNU Lesser General Public License v2.1 UpdatedAug 20, 2024 -
demuxalot Public
Forked from arogozhnikov/demuxalotReliable, scalable, efficient demultiplexing for single-cell RNA sequencing
Python MIT License UpdatedAug 17, 2024 -
deepchem Public
Forked from deepchem/deepchemDemocratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
Python MIT License UpdatedAug 16, 2024 -
ggsc Public
Forked from YuLab-SMU/ggsc🧠 Visualizing Single Cell and Spatial Transcriptomics
R UpdatedAug 16, 2024 -
PyComplexHeatmap Public
Forked from DingWB/PyComplexHeatmapPyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
Python MIT License UpdatedAug 16, 2024 -
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awesome-AI4MolConformation-MD Public
Forked from AspirinCode/awesome-AI4MolConformation-MDList of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) using generative artificial intelligence and deep learning
GNU General Public License v3.0 UpdatedAug 14, 2024 -
ClusterGVis Public
Forked from junjunlab/ClusterGVisOne-step to Cluster and Visualize Gene Expression Matrix
R MIT License UpdatedAug 12, 2024 -
torchdrug Public
Forked from DeepGraphLearning/torchdrugA powerful and flexible machine learning platform for drug discovery
Python Apache License 2.0 UpdatedAug 12, 2024 -
messy Public
Forked from nrennie/messyR package to make a data frame messy and untidy.
R Creative Commons Attribution 4.0 International UpdatedAug 11, 2024 -
LLMs-from-scratch Public
Forked from rasbt/LLMs-from-scratchImplementing a ChatGPT-like LLM in PyTorch from scratch, step by step
Jupyter Notebook Other UpdatedAug 10, 2024 -
voyager Public
Forked from pachterlab/voyagerFrom geospatial to spatial -omics
R Artistic License 2.0 UpdatedAug 5, 2024
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