OSX (macOS) inside a Docker container.

Agent Framework / shim to use Pydantic with LLMs

Develop with AI-powered code suggestions using GitHub Copilot and VS Code

Get your documents ready for gen AI

Matrix eQTL: Ultra fast eQTL analysis via large matrix operations

Joint sequence and structure generation with RoseTTAFold sequence space diffusion

Qiskit is an open-source SDK for working with quantum computers at the level of extended quantum circuits, operators, and primitives.

𝒫robabilistic modeling of RNA velocity ⬱

a dataloader to work with large single cell datasets from lamindb

single cell foundation model for Gene network inference and more

A tool for detecting somatic variants in single cell data

Materials for short, half-day workshops

An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq

Browser extension that simplifies the GitHub interface and adds useful features

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)

A Large Language Model of the CIF format for Crystal Structure Generation

SPECTRA: Spectral framework for evaluation of biomedical AI models

Unified access to several second-generation deconvolution methods

Drop in a screenshot and convert it to clean code (HTML/Tailwind/React/Vue)

Official repository of "SAMURAI: Adapting Segment Anything Model for Zero-Shot Visual Tracking with Motion-Aware Memory"

Model Context Protocol Servers

Simple, unified interface to multiple Generative AI providers

Single cell Morphology Quality Control (coSMicQC)

Map of Open Source Science

POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction

A python program that turns an LLM, running on Ollama, into an automated researcher, which will with a single query determine focus areas to investigate, do websearches and scrape content from vari…

BioNeMo Framework: For building and adapting AI models in drug discovery at scale

This is a repo with links to everything you'd ever want to learn about data engineering

HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors