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1.3k followers · 293 following

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx3Achievement: Arctic Code Vault Contributor

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@yanlilab @mbioinfo

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shenwei356/README.md

Wei Shen 沈 伟

Bioinformatician
Institute for Viral Hepatitis, The Second Affiliated Hospital, Chongqing Medical University, China

Github | Twitter | Biostars | Google Scholar | ORCID

Learn more: http://shenwei.me

I'm grateful to users who have greatly helped to report bugs and suggest new features.
I may respond to issues or fix bugs quickly, but I usually implement new features periodically (two or more weeks).

Pinned Loading

  1. LexicMap LexicMap Public

    LexicMap: efficient sequence alignment against millions of prokaryotic genomes

    Go 112 4

  2. kmcp kmcp Public

    Accurate metagenomic profiling && Fast large-scale sequence/genome searching

    Go 182 13

  3. unikmer unikmer Public

    A versatile toolkit for k-mers with taxonomic information

    Go 76 7

  4. taxonkit taxonkit Public

    A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

    Go 387 31

  5. seqkit seqkit Public

    A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

    Go 1.3k 159

  6. csvtk csvtk Public

    A cross-platform, efficient and practical CSV/TSV toolkit in Golang

    Go 1k 85