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LexicMap Public
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
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seqkit Public
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
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csvtk Public
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
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rush Public
A cross-platform command-line tool for executing jobs in parallel
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taxonkit Public
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
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csvtk-feedstock Public
Forked from conda-forge/csvtk-feedstockA conda-smithy repository for csvtk.
Batchfile BSD 3-Clause "New" or "Revised" License UpdatedDec 5, 2024 -
stable Public
Streaming pretty text table for Golang
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countminsketch Public
An implementation of Count-Min Sketch in Golang
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brename Public
A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression
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cluster_files Public
cluster files into multiple directories by creating symbolic links or moving files
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taxid-changelog Public
NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
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wfa Public
Wavefront alignment algorithm (WFA) in Golang
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bio Public
A lightweight and high-performance bioinformatics package in Golang
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dirsize Public
Summarize sizes of directories and files in directories
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awesome Public
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
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unikmer Public
A versatile toolkit for k-mers with taxonomic information
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ictv-taxdump Public
NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
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memusg Public
Forked from drewkett/memusgA 'time'-like utility for Unix that measures peak memory usage
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gtdb-taxdump Public
GTDB taxonomy taxdump files with trackable TaxIds
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perfect-bioinformatic-tools Public
What should perfect bioinformatic tools be like?
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mof-search Public
Forked from karel-brinda/PhylignBLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours
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xopen Public
Forked from brentp/xopenopen files for buffered reading and writing in #golang
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kmers Public
bit-packed k-mers methods for Golang
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