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Institute of Science and Technology Austria (ISTA)
- Austria
- https://yimingfish.github.io/index.html
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Mirror of https://git.ffmpeg.org/ffmpeg.git
A professional cross-platform SSH/Sftp/Shell/Telnet/Tmux/Serial terminal.
BlackHole is a modern macOS audio loopback driver that allows applications to pass audio to other applications with zero additional latency.
Lightweight CLI download accelerator
MMseqs2: ultra fast and sensitive search and clustering suite
One of the fastest embeddable key-value ACID database without WAL. libmdbx surpasses the legendary LMDB in terms of reliability, features and performance.
Foldseek enables fast and sensitive comparisons of large structure sets.
C library for high-throughput sequencing data formats
De novo assembler for single molecule sequencing reads using repeat graphs
A Robust, High Performance JSON Parser and Generator for R
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Inference of ploidy and heterozygosity structure using whole genome sequencing data
A python extension for quick access to bigWig and bigBed files
software tools for haplotype assembly from sequence data
A (mostly) universal methylation extractor for BS-seq experiments.
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
Note: tabix and bgzip binaries are now part of the HTSlib project.
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates